Package: VIGoR 1.1.5

VIGoR: Variational Bayesian Inference for Genome-Wide Regression

Conducts linear regression using variational Bayesian inference, particularly optimized for genome-wide association mapping and whole-genome prediction which use a number of DNA markers as the explanatory variables. Provides seven regression models which select the important variables (i.e., the variables related to response variables) among the given explanatory variables in different ways (i.e., model structures).

Authors:Akio Onogi [aut, cre, cph], Hiroyoshi Iwata [cph], Takuji Nishimura [ctb], Makoto Matsumoto [ctb], STRUCTURE software contributors [ctb], Alan Miller [ctb], Peter Beerli [ctb]

VIGoR_1.1.5.tar.gz
VIGoR_1.1.5.zip(r-4.5)VIGoR_1.1.5.zip(r-4.4)VIGoR_1.1.5.zip(r-4.3)
VIGoR_1.1.5.tgz(r-4.4-x86_64)VIGoR_1.1.5.tgz(r-4.4-arm64)VIGoR_1.1.5.tgz(r-4.3-x86_64)VIGoR_1.1.5.tgz(r-4.3-arm64)
VIGoR_1.1.5.tar.gz(r-4.5-noble)VIGoR_1.1.5.tar.gz(r-4.4-noble)
VIGoR_1.1.5.tgz(r-4.4-emscripten)VIGoR_1.1.5.tgz(r-4.3-emscripten)
VIGoR.pdf |VIGoR.html
VIGoR/json (API)

# Install 'VIGoR' in R:
install.packages('VIGoR', repos = c('https://onogi.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/onogi/vigor/issues

Datasets:
  • X - An example of SNP genotypes
  • Y - An example of response variables.
  • Z - An example of fixed effects

On CRAN:

3 exports 1 stars 1.44 score 0 dependencies 2 mentions 7 scripts 886 downloads

Last updated 7 days agofrom:ba0086978e. Checks:OK: 9. Indexed: yes.

TargetResultDate
Doc / VignettesOKSep 11 2024
R-4.5-win-x86_64OKSep 11 2024
R-4.5-linux-x86_64OKSep 11 2024
R-4.4-win-x86_64OKSep 11 2024
R-4.4-mac-x86_64OKSep 11 2024
R-4.4-mac-aarch64OKSep 11 2024
R-4.3-win-x86_64OKSep 11 2024
R-4.3-mac-x86_64OKSep 11 2024
R-4.3-mac-aarch64OKSep 11 2024

Exports:hyperparapredict_vigorvigor

Dependencies: