Package: VIGoR 1.1.5

VIGoR: Variational Bayesian Inference for Genome-Wide Regression

Conducts linear regression using variational Bayesian inference, particularly optimized for genome-wide association mapping and whole-genome prediction which use a number of DNA markers as the explanatory variables. Provides seven regression models which select the important variables (i.e., the variables related to response variables) among the given explanatory variables in different ways (i.e., model structures).

Authors:Akio Onogi [aut, cre, cph], Hiroyoshi Iwata [cph], Takuji Nishimura [ctb], Makoto Matsumoto [ctb], STRUCTURE software contributors [ctb], Alan Miller [ctb], Peter Beerli [ctb]

VIGoR_1.1.5.tar.gz
VIGoR_1.1.5.zip(r-4.7)VIGoR_1.1.5.zip(r-4.6)VIGoR_1.1.5.zip(r-4.5)
VIGoR_1.1.5.tgz(r-4.6-x86_64)VIGoR_1.1.5.tgz(r-4.6-arm64)VIGoR_1.1.5.tgz(r-4.5-x86_64)VIGoR_1.1.5.tgz(r-4.5-arm64)
VIGoR_1.1.5.tar.gz(r-4.7-arm64)VIGoR_1.1.5.tar.gz(r-4.7-x86_64)VIGoR_1.1.5.tar.gz(r-4.6-arm64)VIGoR_1.1.5.tar.gz(r-4.6-x86_64)
VIGoR_1.1.5.tgz(r-4.6-emscripten)
manual.pdf |manual.html
card.svg |card.png
VIGoR/json (API)

# Install 'VIGoR' in R:
install.packages('VIGoR', repos = c('https://onogi.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/onogi/vigor/issues

Datasets:
  • X - An example of SNP genotypes
  • Y - An example of response variables.
  • Z - An example of fixed effects

On CRAN:

Conda:

3.00 score 1 stars 7 scripts 228 downloads 2 mentions 3 exports 0 dependencies

Last updated from:ba0086978e. Checks:13 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-arm64OK99
linux-devel-x86_64OK102
source / vignettesOK133
linux-release-arm64OK106
linux-release-x86_64OK102
macos-release-arm64OK150
macos-release-x86_64OK182
macos-oldrel-arm64OK230
macos-oldrel-x86_64OK317
windows-develOK69
windows-releaseOK113
windows-oldrelOK55
wasm-releaseOK80

Exports:hyperparapredict_vigorvigor

Dependencies: